Caenorhabditis elegans Genetics and Genomics

• ACeDB -- A C elegans Database
• Genetics
• Genome Sequence
• Gene Expression and Function
• Gene knockouts
• Vectors and Tools

• ACeDB Genome information
  • Montpellier, France
  • Moulon, France
  • The Sanger Centre, Hinxton, England
  • The Stein Lab, Cold Spring Harbor Laboratory
• Simple gopher interface to acedb (no graphics)
• ACeDB Software (unix versions) and database updates
• MacAce -- the MacIntosh version of ACeDB

• The Caenorhabditis Genetics Center
  • The CGC Strain list
  • The genetic map
• SNP mapping
• Genetic nomenclature
• Tc1 end sequences

• UCSC genome bioinformatics
  • C elegans genome browser
  • C briggsae genome browser
• C elegans Genome Project WWW Site (Sanger Centre, UK)
  • BLAST server
  • C briggsae BLAST server
  • Finished and released sequences
  • Finished but unreleased sequences
  • Unfinished sequences
  • The WORMPEP Database
• The Genome Sequencing Center (Washington University, USA)
  • Nematode Net
  • BLAST server
  • C briggsae BLAST server
  • Finished sequences
  • Sequences in Genbank
  • Shotgun sequences
  • Cosmid status and similarity information

• From Yuji Kohara's lab at the DNA Data Bank of Japan (DDBJ):
  • The Nematode Expression Pattern DataBase
• Ahringer Lab RNAi library
• WormGenes at NCBI
• WormPD -- C elegans Proteome Database
• Worfdb -- C elegans ORFeome Database
• European Bioinformatics Institute: Proteome analysis of Caenorhabditis elegans
• Structural Genomics of Caenorhabditis elegans at UAB
• Hope Lab Expression Pattern Database
• Kim Lab C elegans Microarray
• Jim Kent's (Zahler Lab) Intronerator
• Worm Enhancer

Gene Knockouts

• The C elegans Gene Knockout Consortium
• National Bioresource Project for the Experimental Animal C elegans

• Fire Lab Expression Vector Kit
• Seydoux Lab germline and maternal expression vectors
• C elegans genomic clone requests
• Sequences of vectors used by the genome mapping and sequencing projects

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